NAME

MyShortRead::ChromBed - A perl class to deal with single chromosome BED file.

SYNOPSIS

use MyShortRead::ChromBed;
my $chrBed = new MyShortRead::ChromBed;

DESCRIPTION

This class is used to represent and perform operations on single chromosome BED
file. After the object has been created, it can bin the genome and return a count
vector. Then it can also calculate sliding window counts based on the bin count
vector. Before the object dies, you should call member function to delete the BED file.

EXPORT

This is an object-oriented module.

SEE ALSO

MyShortRead::MyShortRead
MyShortRead::SRBed

AUTHOR

Li Shen, <li.shen@mssm.edu>

COPYRIGHT AND LICENSE

Copyright (C) 2010 by Li Shen

This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself, either Perl version 5.8.8 or, at your option, any later version of Perl 5 you may have available.