Changes for version 1.10 - 2014-02-28

  • Removed dependency on forking and IO::Pipe for handling implicit FASTA section starts. Should fix problems on Windows. Thanks to Francisco Ossandon for the fix!

Documentation

make GFF3 from fasta sequences

Modules

fast, low-level functions for parsing and formatting GFF3
a fast, low-level gff3 parser
compatibility layer to support Bio::GFF3::LowLevel::Parser 1.0 API
make gff3 for the sequences in a fasta file
insert sync (###) directives into an existing GFF3 file. WARNING: this module does not really work in the general case, read the DESCRIPTION section below.